Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 28 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS10080: acetate kinase
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

51% id,
98% cov

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

50% id,
98% cov

P0CW04: acetate kinase (EC 2.7.2.1) from Methanosarcina mazei

50% id,
97% cov

More...

CA265_RS07745: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

26% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory