Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS10080: acetate kinase
is similar to:

ackA / P71104: acetate kinase monomer (EC from Clostridium acetobutylicum

50% id,
98% cov

ackA / E3PRH0: acetate kinase (EC from Acetoanaerobium sticklandii

49% id,
99% cov

PDUW_SALTY / P74879: Propionate kinase PduW; EC from Salmonella typhimurium

49% id,
95% cov


CA265_RS07745: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli

26% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory