Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 230 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 188 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18440: glycoside hydrolase
is similar to:

Ga0059261_1778: beta-fructosidase for D-raffinose catabolism (EC from Sphingomonas koreensis

38% id,
98% cov

BAL70276.1: β-fructofuranosidase (SacA;FF33) (EC

36% id,
91% cov

CAA73208.1: invertase (Inv1) (EC

34% id,
91% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory