Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 13 curated entries in PaperBLAST's database that match '3.2.1.48' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18440: glycoside hydrolase
is similar to:
PaperBLAST

Pf1N1B4_5116: Sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

28% id,
97% cov

AO356_28590: sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

28% id,
93% cov

Pf6N2E2_1650: Sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

27% id,
93% cov

CA265_RS02140: glycosyl hydrolase
is similar to:
PaperBLAST

BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

27% id,
45% cov

AAA31459.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.20|3.2.1.48)

27% id,
41% cov

SUIS_HUMAN / P14410: Sucrase-isomaltase, intestinal; EC 3.2.1.48; EC 3.2.1.10 from Homo sapiens
P14410: oligo-1,6-glucosidase (EC 3.2.1.10); sucrose alpha-glucosidase (EC 3.2.1.48) from Homo sapiens

28% id,
38% cov

More...

CA265_RS24645: alpha-amylase
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

29% id,
35% cov

CA265_RS24670: alpha-amylase
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

27% id,
21% cov

CA265_RS02145: 1,4-alpha-glucan branching enzyme
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

27% id,
21% cov

CA265_RS05780: alpha-xylosidase
is similar to:
PaperBLAST

BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

25% id,
19% cov

CA265_RS05300: ABC transporter substrate-binding protein
is similar to:
PaperBLAST

AAA65097.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

25% id,
6% cov

BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

22% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory