Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 39 curated entries in PaperBLAST's database that match '3.2.1.80' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18440: glycoside hydrolase
is similar to:
PaperBLAST

AFE82292.1: inulinase (InuA;InuAJB13) (EC 3.2.1.80)

39% id,
98% cov

AAK00768.2: exoinulinase (EC 3.2.1.80)

36% id,
98% cov

INUE_ASPFI / E1ABX2: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus ficuum
INUE_ASPNG / Q76HP6: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus niger
BAD01476.1: exo-inulinase (InuE) (EC 3.2.1.80)

37% id,
96% cov

More...

CA265_RS06390: hypothetical protein
is similar to:
PaperBLAST

ABD57319.1: β-fructosidase (FosE) (EC 3.2.1.80)

24% id,
96% cov

BAD88632.1: inulinase / fructan hydrolase (LevH1) (EC 3.2.1.80)

23% id,
95% cov

BAD88632.1: inulinase / fructan hydrolase (LevH1) (EC 3.2.1.80)

24% id,
62% cov

More...

CA265_RS06155: hypothetical protein
is similar to:
PaperBLAST

SACC_BACSU / P05656: Levanase; Beta-D-fructofuranosidase; Exo-beta-D-fructosidase; Exo-levanase; EC 3.2.1.80 from Bacillus subtilis
sacC / GB|CAA63465.1: fructan beta-fructosidase; EC 3.2.1.80 from Bacillus subtilis
P05656: fructan beta-fructosidase (EC 3.2.1.80) from Bacillus subtilis

30% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1567848-1585607 (frame +3) on NZ_CP021237
is similar to:
PaperBLAST

ABD57319.1: β-fructosidase (FosE) (EC 3.2.1.80)
Also see hits to annotated proteins above

24% id,
96% cov

AKA87712.1: fructan β-fructosidase / inulinase (Inu;InuB41) (EC 3.2.1.80)
Also see hits to annotated proteins above

26% id,
42% cov

1588065-1613147 (frame +3) on NZ_CP021237
is similar to:
PaperBLAST

AKA87712.1: fructan β-fructosidase / inulinase (Inu;InuB41) (EC 3.2.1.80)
Also see hits to annotated proteins above

25% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory