Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 16 curated entries in PaperBLAST's database that match '3.5.2.7' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS22880: amidohydrolase
is similar to:
PaperBLAST

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

35% id,
21% cov

HUTI_BACSU / P42084: Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis
P42084: imidazolonepropionase (EC 3.5.2.7) from Bacillus subtilis

30% id,
18% cov

CA265_RS07780: amidohydrolase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

39% id,
16% cov

AO353_12280: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

47% id,
11% cov

PfGW456L13_317: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

47% id,
11% cov

More...

CA265_RS11820: hypothetical protein
is similar to:
PaperBLAST

HUTI_BACSU / P42084: Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis
P42084: imidazolonepropionase (EC 3.5.2.7) from Bacillus subtilis

27% id,
23% cov

Ga0059261_3964: Imidazolonepropionase (EC 3.5.2.7) from Sphingomonas koreensis

33% id,
17% cov

CA265_RS17195: amidohydrolase
is similar to:
PaperBLAST

AO353_12280: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

59% id,
10% cov

Pf1N1B4_1579: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

56% id,
10% cov

PfGW456L13_317: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

56% id,
10% cov

More...

CA265_RS22875: amidohydrolase
is similar to:
PaperBLAST

HUTI_AGRFC / Q8U8Z6: Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum
Q8U8Z6: imidazolonepropionase (EC 3.5.2.7) from Agrobacterium tumefaciens

34% id,
18% cov

AO353_12280: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

37% id,
14% cov

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

46% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5285578-5286816 (frame +1) on NZ_CP021237
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis
Also see hits to annotated proteins above

39% id,
94% cov

AO356_09595: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens
Also see hits to annotated proteins above

37% id,
98% cov

Pf1N1B4_1579: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens
Also see hits to annotated proteins above

37% id,
96% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory