Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 18 curated entries in PaperBLAST's database that match '3.5.3.12' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15455: agmatine deiminase
is similar to:
PaperBLAST

C8J_0892 / A0A5Y8XU16: agmatine deaminase (EC 3.5.3.12) from Campylobacter jejuni

38% id,
97% cov

Q0P9V0: agmatine deiminase (EC 3.5.3.12) from Campylobacter jejuni

38% id,
97% cov

Q9ZN18: agmatine deiminase (EC 3.5.3.12) from Helicobacter pylori

37% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory