Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 2 curated entries in PaperBLAST's database that match '3.7.1.26' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS08350: ureidoglycolate lyase
is similar to:
PaperBLAST

HSERO_RS06355: 2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26) from Herbaspirillum seropedicae

55% id,
98% cov

lra6 / Q1NEI7: L-2,4-diketo-3-deoxyrhamnonate hydrolase (EC 3.7.1.26) from Sphingomonas sp.

50% id,
97% cov

CA265_RS15165: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
is similar to:
PaperBLAST

HSERO_RS06355: 2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26) from Herbaspirillum seropedicae

35% id,
70% cov

lra6 / Q1NEI7: L-2,4-diketo-3-deoxyrhamnonate hydrolase (EC 3.7.1.26) from Sphingomonas sp.

35% id,
69% cov

CA265_RS03145: fumarylacetoacetate hydrolase
is similar to:
PaperBLAST

lra6 / Q1NEI7: L-2,4-diketo-3-deoxyrhamnonate hydrolase (EC 3.7.1.26) from Sphingomonas sp.

29% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory