Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS19860: bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
is similar to:

CA265_RS19860: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC from Pedobacter sp.

100% id,
100% cov

A0A0B6VQ18: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC from Flavobacterium sp.

35% id,
98% cov

D4GV57: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC from Haloferax volcanii

29% id,
96% cov


CA265_RS02050: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC; EC; EC 4.1.2.-; EC from Picrophilus torridus

32% id,
79% cov

CA265_RS04835: dihydrodipicolinate synthetase
is similar to:

O54288: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC; 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC from Saccharolobus solfataricus

26% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory