Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)
Found 90 curated entries in PaperBLAST's database that match '4.1.2.4'.
These curated entries have 57 distinct sequences.
Running ublast with E ≤ 0.01
Found 9 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query
| CA265_RS19165: serine hydroxymethyltransferase is similar to: | PaperBLAST |
P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli | 57% id, 97% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 56% id, 94% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 35% id, 93% cov |
| CA265_RS02210: threonine aldolase is similar to: | PaperBLAST |
LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei | 42% id, 97% cov |
THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana | 41% id, 98% cov |
LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli | 40% id, 98% cov |
| CA265_RS12005: glutathione-dependent formaldehyde dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 28% id, 92% cov |
| CA265_RS13135: class II fructose-bisphosphate aldolase is similar to: | PaperBLAST |
GATY_ECOLX / P0C8J7: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 25% id, 99% cov |
gatY / Q65EY6: D-tagatose-bisphosphate aldolase (EC 4.1.2.40) from Bacillus licheniformis | 28% id, 87% cov |
KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 26% id, 92% cov |
| CA265_RS12755: hydroxyacid dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 28% id, 52% cov |
| CA265_RS02050: 4-hydroxy-tetrahydrodipicolinate synthase is similar to: | PaperBLAST |
NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum | 32% id, 43% cov |
nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida | 26% id, 40% cov |
NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida | 26% id, 40% cov |
| CA265_RS20005: enoyl-CoA hydratase is similar to: | PaperBLAST |
BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii | 30% id, 35% cov |
| CA265_RS03615: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase is similar to: | PaperBLAST |
DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis | 32% id, 30% cov |
| CA265_RS19160: glutamine--fructose-6-phosphate transaminase (isomerizing) is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 27% id, 27% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2973778-2974953 (frame -3) on NZ_CP021237 is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 28% id, 95% cov |
| 335064-335513 (frame +3) on NZ_CP021237 is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 31% id, 27% cov |
Lawrence Berkeley National Laboratory