Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 94 curated entries in PaperBLAST's database that match '4.1.99.1'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS20165: phosphomethylpyrimidine synthase ThiC
is similar to:
PaperBLAST

THIC_SALTY / Q9L9I7: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Salmonella typhimurium
Q9L9I7: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Salmonella enterica

71% id,
96% cov

ThiC / b3994: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Escherichia coli
thiC / P30136: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Escherichia coli

70% id,
96% cov

THIC_CAUVC / Q9A6Q5: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Caulobacter vibrioides
thiC / Q9A6Q5: HMP-P synthase monomer (EC 4.1.99.17) from Caulobacter vibrioides
Q9A6Q5: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Caulobacter vibrioides

66% id,
98% cov

More...

CA265_RS20185: 2-iminoacetate synthase ThiH
is similar to:
PaperBLAST

THIH_ECOLI / P30140: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Escherichia coli
ThiB / b3990: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
thiH / P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli

53% id,
98% cov

THIH_SALTY / Q9S498: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Salmonella typhimurium
Q9S498: 2-iminoacetate synthase (EC 4.1.99.19) from Salmonella enterica

52% id,
98% cov

CA265_RS00580: bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
is similar to:
PaperBLAST

A5U2B7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Mycobacterium tuberculosis

52% id,
95% cov

RIB3 / A5DHJ1: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) from Meyerozyma guilliermondii

48% id,
96% cov

RIB3_CANAL / Q5A3V6: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Candida albicans
RIB3 / PDB|2RIS_A: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Candida albicans
Q5A3V6: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Candida albicans

45% id,
99% cov

More...

CA265_RS17545: deoxyribodipyrimidine photolyase
is similar to:
PaperBLAST

Q8SXK5: (6-4)DNA photolyase (EC 4.1.99.13) from Drosophila melanogaster

32% id,
82% cov

Q0E8P0: (6-4)DNA photolyase (EC 4.1.99.13) from Drosophila melanogaster

32% id,
82% cov

Q9I910: (6-4)DNA photolyase (EC 4.1.99.13) from Xenopus laevis

30% id,
86% cov

More...

CA265_RS17535: deoxyribodipyrimidine photolyase
is similar to:
PaperBLAST

A0A2Z5J5J9: (6-4)DNA photolyase (EC 4.1.99.13) from Chlamydomonas sp.

30% id,
78% cov

UVR3_ARATH / O48652: (6-4)DNA photolyase; Protein UV repair defective 3; EC 4.1.99.13 from Arabidopsis thaliana
UVR3 / O48652: (6-4)DNA photolyase (EC 4.1.99.13) from Arabidopsis thaliana
O48652: (6-4)DNA photolyase (EC 4.1.99.13) from Arabidopsis thaliana

27% id,
77% cov

Q9I910: (6-4)DNA photolyase (EC 4.1.99.13) from Xenopus laevis

24% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory