Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)
Found 53 curated entries in PaperBLAST's database that match '4.2.1.12'.
These curated entries have 33 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query
| CA265_RS05020: tryptophan synthase subunit beta is similar to: | PaperBLAST |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 63% id, 98% cov |
trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis | 54% id, 99% cov |
TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli | 53% id, 95% cov |
| CA265_RS23425: N-acetylmuramic acid 6-phosphate etherase is similar to: | PaperBLAST |
G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia | 60% id, 95% cov |
MURQ_ECOLI / P76535: N-acetylmuramic acid 6-phosphate etherase; MurNAc-6-P etherase; N-acetylmuramic acid 6-phosphate hydrolase; N-acetylmuramic acid 6-phosphate lyase; EC 4.2.1.126 from Escherichia coli | 50% id, 84% cov |
P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae | 52% id, 78% cov |
| CA265_RS15795: dihydroxy-acid dehydratase is similar to: | PaperBLAST |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 29% id, 95% cov |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 29% id, 84% cov |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 29% id, 83% cov |
| CA265_RS15860: threonine dehydratase is similar to: | PaperBLAST |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 29% id, 52% cov |
| CA265_RS05025: tryptophan synthase subunit alpha is similar to: | PaperBLAST |
A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis | 38% id, 36% cov |
| CA265_RS10150: cysteine synthase B is similar to: | PaperBLAST |
trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis | 31% id, 30% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 6 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory