Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS16400: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

Dshi_2060: Aconitate hydratase (EC 4.2.1.3) from Dinoroseobacter shibae

77% id,
99% cov

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

32% id,
97% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

31% id,
97% cov

More...

CA265_RS16405: aconitate hydratase
is similar to:
PaperBLAST

Q8RP87: aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis

65% id,
100% cov

ACON_CAEEL / P34455: Probable aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Caenorhabditis elegans

62% id,
95% cov

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

61% id,
95% cov

More...

CA265_RS15830: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

28% id,
43% cov

acnB / P56418: aconitase (EC 4.2.1.3) from Helicobacter pylori

27% id,
43% cov

ACON_CAEEL / P34455: Probable aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Caenorhabditis elegans

33% id,
20% cov

More...

CA265_RS15840: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Neosartorya fumigata

28% id,
20% cov

ACON_CAEEL / P34455: Probable aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Caenorhabditis elegans

30% id,
14% cov

Q9NFX2: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster

32% id,
13% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory