Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 33 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS11630: prephenate dehydratase
is similar to:

CA265_RS11630: prephenate and/or arogenate dehydratase (EC from Pedobacter sp.

100% id,
100% cov

Echvi_0123: prephenate and/or arogenate dehydratase (EC from Echinicola vietnamensis

43% id,
97% cov

BT3936: prephenate and/or arogenate dehydratase (EC from Bacteroides thetaiotaomicron

40% id,
98% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory