Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)
Found 11 curated entries in PaperBLAST's database that match '4.2.1.90' as complete word(s).
These curated entries have 7 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query
| CA265_RS12250: enolase is similar to: | PaperBLAST |
lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp. | 30% id, 87% cov |
RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp. | 28% id, 87% cov |
RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli | 28% id, 82% cov |
| CA265_RS13665: galactonate dehydratase is similar to: | PaperBLAST |
RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp. | 29% id, 86% cov |
lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp. | 29% id, 83% cov |
A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis | 28% id, 73% cov |
| CA265_RS19875: altronate hydrolase is similar to: | PaperBLAST |
BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans | 31% id, 76% cov |
| CA265_RS04670: altronate hydrolase is similar to: | PaperBLAST |
BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans | 31% id, 75% cov |
| CA265_RS01240: hypothetical protein is similar to: | PaperBLAST |
RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp. | 24% id, 88% cov |
| CA265_RS04225: mandelate racemase is similar to: | PaperBLAST |
A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis | 29% id, 42% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory