Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 590 curated entries in PaperBLAST's database that match '4.2.3.1'.

These curated entries have 408 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS23465: threonine synthase
is similar to:
PaperBLAST

THRC_ECOLI / P00934: Threonine synthase; TS; EC 4.2.3.1 from Escherichia coli
ThrC / b0004: threonine synthase (EC 4.2.3.1) from Escherichia coli
thrC / GB|BAB96581.1: threonine synthase; EC 4.2.3.1 from Escherichia coli
thrC / P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli
P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli

44% id,
100% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

38% id,
93% cov

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

36% id,
96% cov

More...

CA265_RS21885: 6-pyruvoyl tetrahydrobiopterin synthase
is similar to:
PaperBLAST

PTPS_MOUSE / Q9R1Z7: 6-pyruvoyl tetrahydrobiopterin synthase; PTP synthase; PTPS; EC 4.2.3.12 from Mus musculus

44% id,
91% cov

P27213: 6-pyruvoyltetrahydropterin synthase (EC 4.2.3.12) from Rattus norvegicus

44% id,
91% cov

PTPS_HUMAN / Q03393: 6-pyruvoyl tetrahydrobiopterin synthase; PTP synthase; PTPS; EC 4.2.3.12 from Homo sapiens
Q03393: 6-pyruvoyltetrahydropterin synthase (EC 4.2.3.12) from Homo sapiens

43% id,
90% cov

More...

CA265_RS04615: 3-dehydroquinate synthase
is similar to:
PaperBLAST

EEVS_STRGA / B0B0T7: 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Streptomyces glaucescens

32% id,
92% cov

EEVS_STIAD / E3FKM2: 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Stigmatella aurantiaca

31% id,
91% cov

CETA_ACTSX / A1YPR2: 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Actinomyces sp.
A1YPR2: 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Actinomyces sp.

30% id,
95% cov

More...

CA265_RS15205: aspartate aminotransferase family protein
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

30% id,
88% cov

CA265_RS13740: cysteine synthase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

27% id,
88% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

26% id,
79% cov

CA265_RS11615: 3-dehydroquinate synthase
is similar to:
PaperBLAST

EVS_STIAD / Q08VU0: 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Stigmatella aurantiaca
Q08VU0: 2-epi-valiolone synthase (EC 4.2.3.155) from Stigmatella aurantiaca

32% id,
73% cov

SALQ_STRA4 / A8D7K2: 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Streptomyces albus
A8D7K2: 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Streptomyces albus

29% id,
82% cov

DOIS_MICEC / Q70KD0: 2-deoxy-scyllo-inosose synthase; DOI synthase; DOIS; EC 4.2.3.124 from Micromonospora echinospora

30% id,
76% cov

More...

CA265_RS10150: cysteine synthase B
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

28% id,
49% cov

CA265_RS11595: haloacid dehalogenase
is similar to:
PaperBLAST

DRTB_ASPCI / A0A0U5GNT1: Drimenol cyclase drtB; Drimane-type sesquiterpene ester biosynthesis cluster protein B; Drimenol synthase; EC 4.2.3.194 from Aspergillus calidoustus

24% id,
39% cov

CA265_RS10535: isoprenyl synthetase
is similar to:
PaperBLAST

OBLA_ASPCI / A0A0U5G0B1: Ophiobolin F synthase; OS; Aspergilol biosynthesis cluster protein AuAS; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus calidoustus

27% id,
34% cov

OBLA_COCH5 / M2V8C1: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Cochliobolus heterostrophus

23% id,
39% cov

OBLA_ASPCL / A1C8C3: Ophiobolin F synthase oblA; acOS; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus clavatus
OC / A1C8C3: ophiobolin F synthase (EC 4.2.3.145; EC 2.5.1.81; EC 2.5.1.29) from Aspergillus clavatus

23% id,
25% cov

CA265_RS25110: polyprenyl synthetase
is similar to:
PaperBLAST

OBLA_ASPCI / A0A0U5G0B1: Ophiobolin F synthase; OS; Aspergilol biosynthesis cluster protein AuAS; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus calidoustus

22% id,
37% cov

OBLA_COCH5 / M2V8C1: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Cochliobolus heterostrophus

21% id,
36% cov

NFSS_NEOFI / A1DN30: Sesterfisherol synthase; SS; Sesterfisheric acid biosynthesis cluster protein NfSS; EC 4.2.3.176; EC 2.5.1.29; EC 2.5.1.81 from Neosartorya fischeri

24% id,
28% cov

CA265_RS15950: glutamate-1-semialdehyde-2,1-aminomutase
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

28% id,
26% cov

CA265_RS07305: hypothetical protein
is similar to:
PaperBLAST

OBLA_EMEVA / A0A1V1FVQ6: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Emericella variicolor

40% id,
8% cov

OBLA_EMEVA / A0A1V1FVQ6: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Emericella variicolor

45% id,
6% cov

OBLA_EMEVA / A0A1V1FVQ6: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Emericella variicolor

59% id,
4% cov

CA265_RS23330: DUF5107 domain-containing protein
is similar to:
PaperBLAST

TPS1_PIPNI / A0A1V0E492: Terpene synthase 1; PnTPS1; Alpha-humulene synthase; Beta-caryophyllene synthase; PnCPS; EC 4.2.3.104; EC 4.2.3.57 from Piper nigrum

28% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory