Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS23465: threonine synthase
is similar to:
PaperBLAST

THRC_ECOLI / P00934: Threonine synthase; TS; EC 4.2.3.1 from Escherichia coli
ThrC / b0004: threonine synthase (EC 4.2.3.1) from Escherichia coli
thrC / GB|BAB96581.1: threonine synthase; EC 4.2.3.1 from Escherichia coli
thrC / P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli
P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli

44% id,
100% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

38% id,
93% cov

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

36% id,
96% cov

More...

CA265_RS13740: cysteine synthase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

27% id,
88% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

26% id,
79% cov

CA265_RS10150: cysteine synthase B
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

28% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory