Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)
Found 117 curated entries in PaperBLAST's database that match '4.2.3.4'.
These curated entries have 80 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query
| CA265_RS11615: 3-dehydroquinate synthase is similar to: | PaperBLAST |
Q8U0A8: 3-dehydroquinate synthase (EC 4.2.3.4) from Pyrococcus furiosus | 39% id, 97% cov |
AROB_HELPY / P56081: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori | 38% id, 95% cov |
Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis | 36% id, 92% cov |
| CA265_RS04615: 3-dehydroquinate synthase is similar to: | PaperBLAST |
AROB_ECOLI / P07639: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Escherichia coli | 33% id, 98% cov |
AROB_HELPY / P56081: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori | 30% id, 95% cov |
Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis | 32% id, 80% cov |
| CA265_RS11640: 3-phosphoshikimate 1-carboxyvinyltransferase is similar to: | PaperBLAST |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans | 33% id, 27% cov |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae | 32% id, 28% cov |
| CA265_RS10535: isoprenyl synthetase is similar to: | PaperBLAST |
FC1_PHOAM / A2PZA5: Fusicoccadiene synthase; FS; Fusicoccin A biosynthetic gene clusters protein 1; PaDC4:GGS; EC 4.2.3.43; EC 2.5.1.29 from Phomopsis amygdali | 28% id, 31% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 4884183-4884959 (frame -1) on NZ_CP021237 is similar to: | PaperBLAST |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae | 27% id, 15% cov |
Lawrence Berkeley National Laboratory