Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 105 curated entries in PaperBLAST's database that match '4.2.3.5'.

These curated entries have 77 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS11645: chorismate synthase
is similar to:
PaperBLAST

AROC_ECOLI / P12008: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 from Escherichia coli
AroC / b2329: chorismate synthase (EC 4.2.3.5) from Escherichia coli
aroC / P12008: chorismate synthase (EC 4.2.3.5) from Escherichia coli

53% id,
97% cov

AROC_YEAST / P28777: Chorismate synthase ARO2; 5-enolpyruvylshikimate-3-phosphate phospholyase; Aromatic amino acid requiring protein 2; EC 1.5.1.38; EC 4.2.3.5 from Saccharomyces cerevisiae

50% id,
97% cov

C8Z2I6: chorismate synthase (EC 4.2.3.5) from Verticillium longisporum

50% id,
96% cov

More...

CA265_RS23330: DUF5107 domain-containing protein
is similar to:
PaperBLAST

TPS1_PIPNI / A0A1V0E492: Terpene synthase 1; PnTPS1; Alpha-humulene synthase; Beta-caryophyllene synthase; PnCPS; EC 4.2.3.104; EC 4.2.3.57 from Piper nigrum
A0A1V0E492: (-)-beta-caryophyllene synthase (EC 4.2.3.57); (+)-beta-caryophyllene synthase (EC 4.2.3.89) from Piper nigrum

28% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory