Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 14 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS11645: chorismate synthase
is similar to:

AROC_ECOLI / P12008: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC from Escherichia coli
AroC / b2329: chorismate synthase (EC from Escherichia coli
aroC / P12008: chorismate synthase (EC from Escherichia coli

53% id,
97% cov

AROC_YEAST / P28777: Chorismate synthase ARO2; 5-enolpyruvylshikimate-3-phosphate phospholyase; Aromatic amino acid requiring protein 2; EC; EC from Saccharomyces cerevisiae

50% id,
97% cov

C8Z2I6: chorismate synthase (EC from Verticillium longisporum

50% id,
96% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory