Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 52 curated entries in PaperBLAST's database that match '4.3.2.1'.

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18485: argininosuccinate lyase
is similar to:
PaperBLAST

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

100% id,
100% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

61% id,
99% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

59% id,
100% cov

More...

CA265_RS03610: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus
Q7SIB9: imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Thermus thermophilus

57% id,
99% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima
hisF / Q9X0C6: imidazole-glycerol-phosphate synthase cycloligase subunit (EC 4.3.2.10) from Thermotoga maritima
Q9X0C6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Thermotoga maritima

57% id,
98% cov

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

50% id,
99% cov

More...

CA265_RS03620: imidazole glycerol phosphate synthase subunit HisH
is similar to:
PaperBLAST

HIS5_ECOLI / P60595: Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 from Escherichia coli
HisH / b2023: imidazole glycerol phosphate synthase subunit HisH (EC 4.3.2.10) from Escherichia coli
hisH / P60595: imidazole glycerol phosphate synthase subunit HisH (EC 4.3.2.10) from Escherichia coli

45% id,
100% cov

DvMF_2305: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

39% id,
95% cov

DVU0285: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

37% id,
94% cov

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CA265_RS19265: imidazole glycerol phosphate synthase subunit HisH
is similar to:
PaperBLAST

Q5NMD4: imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Zymomonas mobilis

43% id,
96% cov

HIS5_ECOLI / P60595: Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 from Escherichia coli
HisH / b2023: imidazole glycerol phosphate synthase subunit HisH (EC 4.3.2.10) from Escherichia coli
hisH / P60595: imidazole glycerol phosphate synthase subunit HisH (EC 4.3.2.10) from Escherichia coli

38% id,
99% cov

HSERO_RS20325: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Herbaspirillum seropedicae

37% id,
98% cov

More...

CA265_RS19260: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS6_ECOLI / P60664: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Escherichia coli
HisF / b2025: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli
hisF / P60664: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli

31% id,
97% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima
hisF / Q9X0C6: imidazole-glycerol-phosphate synthase cycloligase subunit (EC 4.3.2.10) from Thermotoga maritima
Q9X0C6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Thermotoga maritima

33% id,
91% cov

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

33% id,
91% cov

More...

CA265_RS03615: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
is similar to:
PaperBLAST

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

28% id,
94% cov

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

27% id,
94% cov

Q5NMD6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Zymomonas mobilis

25% id,
94% cov

More...

CA265_RS19055: nitronate monooxygenase
is similar to:
PaperBLAST

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

26% id,
69% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus
Q7SIB9: imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Thermus thermophilus

31% id,
40% cov

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

32% id,
38% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory