Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 20 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18485: argininosuccinate lyase
is similar to:

CA265_RS18485: arginosuccinate lyase (EC from Pedobacter sp.

100% id,
100% cov

BT3733: arginosuccinate lyase (EC from Bacteroides thetaiotaomicron

61% id,
99% cov

Echvi_3852: arginosuccinate lyase (EC from Echinicola vietnamensis

59% id,
100% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory