Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS25430: UDP-glucose 4-epimerase GalE
is similar to:
PaperBLAST

Echvi_1472: UDP-glucose 4-epimerase (EC 5.1.3.2) from Echinicola vietnamensis

55% id,
100% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

51% id,
96% cov

A0A0H2UQY4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus pneumoniae

51% id,
97% cov

More...

CA265_RS25425: NAD-dependent dehydratase
is similar to:
PaperBLAST

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

34% id,
97% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

32% id,
99% cov

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

32% id,
97% cov

More...

CA265_RS19340: dTDP-glucose 4,6-dehydratase
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

29% id,
98% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

29% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

29% id,
98% cov

More...

CA265_RS07970: NAD-dependent epimerase
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

28% id,
98% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

27% id,
98% cov

UGE3_ARATH / Q8LDN8: Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3; UDP-D-xylose 4-epimerase; UDP-L-arabinose 4-epimerase; UDP-galactose 4-epimerase 3; UDP-glucose 4-epimerase 3; AtUGE3; EC 5.1.3.2; EC 5.1.3.5 from Arabidopsis thaliana
Q8LDN8: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

26% id,
95% cov

More...

CA265_RS08010: polysaccharide biosynthesis protein
is similar to:
PaperBLAST

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

34% id,
79% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

23% id,
99% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

25% id,
77% cov

More...

CA265_RS19210: GDP-mannose 4,6-dehydratase
is similar to:
PaperBLAST

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

27% id,
94% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

29% id,
80% cov

CA265_RS19675: GDP-fucose synthetase
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

25% id,
99% cov

CA265_RS17470: hypothetical protein
is similar to:
PaperBLAST

GALE_ECOLI / P09147: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Escherichia coli
GalD / b0759: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
galE / P09147: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
P09147: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli

25% id,
98% cov

GALE_HUMAN / Q14376: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Homo sapiens
GALE / Q14376: UDP-galactose 4-epimerase (EC 5.1.3.2; EC 5.1.3.7) from Homo sapiens
Q14376: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Homo sapiens

26% id,
84% cov

GALE_BIFL2 / E8MF10: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Bifidobacterium longum
lnpD / GB|BAF73927.1: UDP-glucose 4-epimerase; EC 5.1.3.2 from Bifidobacterium longum

27% id,
73% cov

CA265_RS19225: hypothetical protein
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

27% id,
89% cov

CA265_RS19205: GDP-fucose synthetase
is similar to:
PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

25% id,
96% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

24% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

23% id,
94% cov

CA265_RS22630: nucleoside-diphosphate sugar epimerase
is similar to:
PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

27% id,
86% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

27% id,
86% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

24% id,
79% cov

CA265_RS19185: polysaccharide biosynthesis protein
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

26% id,
83% cov

Q8LNZ3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Oryza sativa

26% id,
62% cov

UGE2_ARATH / Q9T0A7: UDP-glucose 4-epimerase 2; AtUGE2; UDP-galactose 4-epimerase 2; EC 5.1.3.2 from Arabidopsis thaliana
Q9T0A7: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

26% id,
61% cov

More...

CA265_RS19215: nucleoside-diphosphate-sugar epimerase
is similar to:
PaperBLAST

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

23% id,
80% cov

CA265_RS20555: galactose-1-epimerase
is similar to:
PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

33% id,
47% cov

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

32% id,
44% cov

CA265_RS08330: galactose-1-epimerase
is similar to:
PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

31% id,
45% cov

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

31% id,
44% cov

CA265_RS06955: galactose-1-epimerase
is similar to:
PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

31% id,
45% cov

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

28% id,
49% cov

CA265_RS09560: galactose-1-epimerase
is similar to:
PaperBLAST

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

31% id,
42% cov

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

28% id,
44% cov

CA265_RS02405: short-chain dehydrogenase
is similar to:
PaperBLAST

uge5 / Q4WV46: UDP-glucose 4-epimerase (EC 5.1.3.2) from Neosartorya fumigata

26% id,
34% cov

CA265_RS13875: erythronolide synthase
is similar to:
PaperBLAST

GALE_NEIMC / P56986: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

34% id,
26% cov

GALE_NEIMB / P56985: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

34% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory