Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 7 curated entries in PaperBLAST's database that match '5.3.1.12' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS19870: glucuronate isomerase
is similar to:
PaperBLAST

CA265_RS19870: Glucuronate isomerase (EC 5.3.1.12) from Pedobacter sp.

100% id,
100% cov

UXAC_ECOLI / P0A8G3: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Escherichia coli
YgjZ / b3092: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
uxaC / P0A8G3: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli

52% id,
99% cov

UXAC_BACSU / O34808: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Bacillus subtilis

50% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory