Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 15 curated entries in PaperBLAST's database that match '5.3.1.14' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS02635: sugar isomerase
is similar to:
PaperBLAST

Echvi_1573: L-rhamnose isomerase (EC 5.3.1.14) from Echinicola vietnamensis

65% id,
100% cov

Q75WH8: L-rhamnose isomerase (EC 5.3.1.14) from Pseudomonas stutzeri

52% id,
98% cov

SMc02321: L-rhamnose isomerase (EC 5.3.1.14) from Sinorhizobium meliloti

53% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory