Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 43 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS08615: L-arabinose isomerase
is similar to:

CA265_RS08615: L-arabinose isomerase (EC from Pedobacter sp.

100% id,
100% cov

Echvi_1879: L-arabinose isomerase (EC from Echinicola vietnamensis

72% id,
99% cov

F6KRI7: L-arabinose isomerase (EC from Anoxybacillus flavithermus

59% id,
100% cov


CA265_RS08900: D-arabinose 5-phosphate isomerase
is similar to:

Q3IG38: L-arabinose isomerase (EC from Pseudoalteromonas haloplanktis

39% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory