Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 23 curated entries in PaperBLAST's database that match '5.3.1.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS19715: xylose isomerase
is similar to:
PaperBLAST

Echvi_1876: Xylose isomerase (EC 5.3.1.5) from Echinicola vietnamensis

73% id,
99% cov

Q8A9M2: xylose isomerase (EC 5.3.1.5) from Bacteroides thetaiotaomicron

65% id,
99% cov

Q9P8C9: xylose isomerase (EC 5.3.1.5) from Piromyces sp.

61% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory