Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS04860: N-acylglucosamine 2-epimerase
is similar to:

HSERO_RS03650: Mannose isomerase (EC from Herbaspirillum seropedicae

24% id,
68% cov

Sama_0560: D-mannose isomerase (EC from Shewanella amazonensis

34% id,
30% cov

Ac3H11_2078: D-mannose isomerase (EC from Acidovorax sp.

32% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory