Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 50 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS09660: phosphoglucomutase
is similar to:

PGCA_BACSU / P18159: Phosphoglucomutase; PGM; Alpha-phosphoglucomutase; Glucose phosphomutase; EC from Bacillus subtilis
pgcA / P18159: α-phosphoglucomutase (EC from Bacillus subtilis

45% id,
97% cov

PGCA_STAA8 / Q2FVC1: Phosphoglucomutase; PGM; Alpha-phosphoglucomutase; Glucose phosphomutase; EC from Staphylococcus aureus

37% id,
96% cov

PGM2_HUMAN / Q96G03: Phosphopentomutase; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-2; EC; EC from Homo sapiens
PGM2 / Q96G03: phosphoglucomutase-2 (EC; EC from Homo sapiens

34% id,
95% cov


CA265_RS13185: phosphoglucosamine mutase
is similar to:

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC; EC from Thermococcus kodakarensis

38% id,
98% cov

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC; phosphomannomutase (EC from Saccharolobus solfataricus

31% id,
98% cov

ALGC_PSEAE / P26276: Phosphomannomutase/phosphoglucomutase; PMM / PGM; EC; EC from Pseudomonas aeruginosa
algC / P26276: phosphomannomutase (EC; EC from Pseudomonas aeruginosa

30% id,
94% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory