Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 4 curated entries in PaperBLAST's database that match '5.5.1.27' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS12250: enolase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

31% id,
99% cov

CA265_RS13665: galactonate dehydratase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

29% id,
98% cov

CA265_RS12920: dipeptide epimerase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

25% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory