Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 140 curated entries in PaperBLAST's database that match '6.3.1.2'.

These curated entries have 101 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS05180: glutamine synthetase type III
is similar to:
PaperBLAST

GLNA3_BACFR / P15623: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase III; GSIII; EC 6.3.1.2 from Bacteroides fragilis

58% id,
100% cov

Q5LGP1: glutamine synthetase (EC 6.3.1.2) from Bacteroides fragilis

58% id,
100% cov

gluN / Q4ZH57: glutamine synthetase subunit (EC 6.3.1.2) from Ruminococcus albus

49% id,
99% cov

More...

CA265_RS24865: glutamine synthetase
is similar to:
PaperBLAST

GLN1A_BACSU / P12425: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Bacillus subtilis
P12425: glutamine synthetase (EC 6.3.1.2) from Bacillus subtilis

33% id,
99% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

32% id,
94% cov

GLNA1_METMA / Q8PY99: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Methanosarcina mazei
Q8PY99: glutamine synthetase (EC 6.3.1.2) from Methanosarcina mazei

29% id,
98% cov

More...

CA265_RS07745: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PURT_ECOLI / P33221: Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; GAR transformylase T; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 6.3.1.21 from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli
P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21) from Escherichia coli

26% id,
96% cov

E8X9F0: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21) from Salmonella enterica

25% id,
94% cov

purT / Q58881: phosphoribosylglycinamide formyltransferase monomer (EC 6.3.1.21) from Methanocaldococcus jannaschii

25% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory