Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 21 curated entries in PaperBLAST's database that match '6.3.4.5'.

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18545: argininosuccinate synthase
is similar to:
PaperBLAST

BT3760: arginosuccinate synthetase (EC 6.3.4.5) from Bacteroides thetaiotaomicron

55% id,
98% cov

N515DRAFT_3766: arginosuccinate synthetase (EC 6.3.4.5) from Dyella japonica

38% id,
99% cov

S4V5K7: argininosuccinate synthase (EC 6.3.4.5) from Protopterus annectens

30% id,
94% cov

More...

CA265_RS09945: tRNA 2-thiouridine(34) synthase MnmA
is similar to:
PaperBLAST

S4V5K7: argininosuccinate synthase (EC 6.3.4.5) from Protopterus annectens

27% id,
29% cov

ARG1: argininosuccinate synthase; EC 6.3.4.5 from Candida albicans

28% id,
26% cov

ASSY_BOVIN / P14568: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Bos taurus

30% id,
24% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory