Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 21 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18545: argininosuccinate synthase
is similar to:

BT3760: arginosuccinate synthetase (EC from Bacteroides thetaiotaomicron

55% id,
98% cov

N515DRAFT_3766: arginosuccinate synthetase (EC from Dyella japonica

38% id,
99% cov

S4V5K7: argininosuccinate synthase (EC from Protopterus annectens

30% id,
94% cov


CA265_RS09945: tRNA 2-thiouridine(34) synthase MnmA
is similar to:

S4V5K7: argininosuccinate synthase (EC from Protopterus annectens

27% id,
29% cov

ARG1: argininosuccinate synthase; EC from Candida albicans

28% id,
26% cov

ASSY_BOVIN / P14568: Argininosuccinate synthase; Citrulline--aspartate ligase; EC from Bos taurus

30% id,
24% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory