Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 7 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase small subunit' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15840: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

48% id,
96% cov

LEUD_RHIL3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium leguminosarum

46% id,
95% cov

LEUD_CORGL / Q8NQV7: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Corynebacterium glutamicum

46% id,
95% cov

More...

CA265_RS16405: aconitate hydratase
is similar to:
PaperBLAST

LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana

29% id,
69% cov

LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

28% id,
58% cov

LEUD_RHIL3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium leguminosarum

35% id,
45% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory