Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 2 curated entries in PaperBLAST's database that match 'N-succinylglutamate synthase' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18550: N-acetyltransferase
is similar to:
PaperBLAST

Echvi_3845: N-succinylglutamate synthase from Echinicola vietnamensis

63% id,
97% cov

BT3761: N-succinylglutamate synthase from Bacteroides thetaiotaomicron

52% id,
97% cov

CA265_RS00200: N-acetyltransferase
is similar to:
PaperBLAST

BT3761: N-succinylglutamate synthase from Bacteroides thetaiotaomicron

47% id,
92% cov

Echvi_3845: N-succinylglutamate synthase from Echinicola vietnamensis

53% id,
80% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory