Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)
Found 3 curated entries in PaperBLAST's database that match 'homoaconitase small subunit' as complete word(s).
These curated entries have 2 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query
| CA265_RS15840: 3-isopropylmalate dehydratase small subunit is similar to: | PaperBLAST |
HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii | 36% id, 69% cov |
HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus | 30% id, 79% cov |
| CA265_RS16405: aconitate hydratase is similar to: | PaperBLAST |
HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus | 30% id, 69% cov |
HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii | 37% id, 39% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory