Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 35 curated entries in PaperBLAST's database that match 'sucrose hydrolase' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18440: glycoside hydrolase
is similar to:
PaperBLAST

scrB / Q9ZHJ7: sucrose hydrolase from Clostridium beijerinckii

25% id,
94% cov

INVA_VIGRR / P29001: Acid beta-fructofuranosidase; Acid invertase; AI; Acid sucrose hydrolase; Vacuolar invertase; EC 3.2.1.26 from Vigna radiata

29% id,
81% cov

AAP79503.1: sucrose hydrolase (CscA) (EC 3.2.1.26)

29% id,
75% cov

More...

CA265_RS24660: alpha-amylase
is similar to:
PaperBLAST

6lggA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q complexed with sucrose

21% id,
35% cov

6lgbA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase complexed with glucose

21% id,
35% cov

6lghA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q covalent intermediate

21% id,
35% cov

More...

CA265_RS02145: 1,4-alpha-glucan branching enzyme
is similar to:
PaperBLAST

6lggA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q complexed with sucrose

28% id,
16% cov

6lgbA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase complexed with glucose

28% id,
16% cov

6lghA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q covalent intermediate

28% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory