Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c03650: malate dehydrogenase Mdh
is similar to:
PaperBLAST

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

52% id,
98% cov

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

51% id,
97% cov

Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum

51% id,
96% cov

More...

PGA1_c04920: l-lactate dehydrogenase IldD
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

33% id,
91% cov

PGA1_c29700: glycolate oxidase iron-sulfur subunit
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

25% id,
99% cov

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

25% id,
85% cov

PGA1_c19350: putative aldehyde dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

33% id,
53% cov

PGA1_c09430: l-lactate dehydrogenase IldD
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

34% id,
47% cov

PGA1_c27200: alcohol dehydrogenase, iron containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

31% id,
47% cov

PGA1_c23360: putative iron containing alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

32% id,
45% cov

PGA1_c07690: (S)-mandelate dehydrogenase MdlB
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

39% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

483273-484478 (frame -1) on PGA1_c
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans
Also see hits to annotated proteins above

33% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory