Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 35 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c08650: homoserine dehydrogenase Hom
is similar to:

Ga0059261_2711: homoserine dehydrogenase (EC from Sphingomonas koreensis

49% id,
99% cov

P46806: homoserine dehydrogenase (EC from Mycobacterium leprae

42% id,
98% cov

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC from Neisseria gonorrhoeae

41% id,
99% cov


PGA1_c23510: aspartokinase LysC
is similar to:

Q9WZ17: homoserine dehydrogenase (EC; aspartate kinase (EC from Thermotoga maritima

38% id,
54% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC; EC from Pedobacter sp.

33% id,
42% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC; EC from Echinicola vietnamensis

29% id,
45% cov


PGA1_c15510: glutamate 5-kinase ProB
is similar to:

BT2403: aspartate kinase / homoserine dehydrogenase (EC; EC from Bacteroides thetaiotaomicron

24% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory