Curated BLAST
Searching in Phaeobacter inhibens BS107 (Phaeo)
Found 67 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).
These curated entries have 46 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Phaeobacter inhibens BS107, or try another query
PGA1_c28340: isocitrate dehydrogenase [NADP]
is similar to: | PaperBLAST |
IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii
icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii | 57% id,
99% cov |
idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola | 57% id,
100% cov |
IDH_CORGL / P50216: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Corynebacterium glutamicum
P50216: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Corynebacterium glutamicum | 57% id,
99% cov |
Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea | 57% id,
99% cov |
B2ZAA4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Streptomyces lividans | 57% id,
98% cov |
O53611: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis | 54% id,
99% cov |
More... |
PGA1_c29830: 3-isopropylmalate dehydrogenase LeuB
is similar to: | PaperBLAST |
O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus | 30% id,
94% cov |
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus | 31% id,
90% cov |
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii | 28% id,
93% cov |
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum | 26% id,
94% cov |
icd / RF|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus
P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus | 35% id,
67% cov |
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix | 29% id,
54% cov |
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui | 35% id,
39% cov |
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa | 31% id,
42% cov |
More... |
PGA1_c17990: D-malate dehydrogenase
is similar to: | PaperBLAST |
O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus | 30% id,
89% cov |
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli
IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
P08200: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42); [Isocitrate dehydrogenase (NADP+)] kinase (EC 2.7.11.5) from Escherichia coli | 29% id,
89% cov |
Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea | 29% id,
89% cov |
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori | 27% id,
91% cov |
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii | 28% id,
86% cov |
icd / RF|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus
P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus | 35% id,
67% cov |
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum | 24% id,
85% cov |
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui | 33% id,
40% cov |
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix | 27% id,
47% cov |
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis
icd / GB|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis | 40% id,
28% cov |
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa | 39% id,
28% cov |
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii | 29% id,
38% cov |
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii | 38% id,
27% cov |
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus | 32% id,
29% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory