Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 14 curated entries in PaperBLAST's database that match '1.1.1.71' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c08820: putative oxidoreductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

34% id,
96% cov

PGA1_c04550: putative formaldehyde dehydrogenase
is similar to:
PaperBLAST

D4GP73: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloferax volcanii

31% id,
94% cov

Q9HMB6: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp.

32% id,
78% cov

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

26% id,
91% cov

PGA1_c33460: oxidoreductase UcpA
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

36% id,
78% cov

PGA1_c02510: S-(hydroxymethyl)glutathione dehydrogenase FrmA
is similar to:
PaperBLAST

D4GP73: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloferax volcanii

27% id,
99% cov

Q9HMB6: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp.

26% id,
99% cov

PGA1_c17930: 3-oxoacyl-[acyl-carrier-protein] reductase FabG
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

29% id,
90% cov

PGA1_c27390: short-chain dehydrogenase/reductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

25% id,
97% cov

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

30% id,
64% cov

PGA1_c03390: acetoacetyl-CoA reductase PhaB
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

27% id,
89% cov

PGA1_c31980: short chain dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

29% id,
81% cov

PGA1_c27580: putative short chain dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

25% id,
91% cov

PGA1_c13170: sorbitol dehydrogenase PolS
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

26% id,
88% cov

PGA1_c03910: short chain dehydrogenase / reductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

28% id,
77% cov

PGA1_c10000: short chain dehydrogenase / reductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

28% id,
78% cov

PGA1_c10780: putative short chain dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

23% id,
91% cov

PGA1_c21880: putative alcohol dehydrogenase
is similar to:
PaperBLAST

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

24% id,
86% cov

PGA1_c11320: 3-hydroxyacyl-CoA dehydrogenase type-2
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

24% id,
77% cov

PGA1_c07740: putative gluconate 5-dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

25% id,
69% cov

PGA1_c19350: putative aldehyde dehydrogenase
is similar to:
PaperBLAST

A0A0H3W5V0: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermoanaerobacterium saccharolyticum

33% id,
53% cov

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

34% id,
49% cov

PGA1_c23120: putative sorbitol dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

30% id,
49% cov

PGA1_c27200: alcohol dehydrogenase, iron containing
is similar to:
PaperBLAST

A0A0H3W5V0: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermoanaerobacterium saccharolyticum

31% id,
47% cov

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

31% id,
45% cov

PGA1_c23360: putative iron containing alcohol dehydrogenase
is similar to:
PaperBLAST

A0A0H3W5V0: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermoanaerobacterium saccharolyticum

32% id,
45% cov

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

31% id,
45% cov

PGA1_c32250: gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC
is similar to:
PaperBLAST

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

22% id,
52% cov

PGA1_c06450: short-chain dehydrogenases/reductase domain-containing protein
is similar to:
PaperBLAST

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

29% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2396906-2397730 (frame +2) on PGA1_c
is similar to:
PaperBLAST

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens
Also see hits to annotated proteins above

26% id,
68% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory