Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.9' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c13170: sorbitol dehydrogenase PolS
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 33% id,
99% cov

PGA1_c23090: putative acetoin(diacetyl) reductase
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 32% id,
99% cov

PGA1_c31980: short chain dehydrogenase
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 31% id,
99% cov

PGA1_c34320: L-threonine 3-dehydrogenase Tdh
is similar to:		 PaperBLAST

HSERO_RS17015: sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) from Herbaspirillum seropedicae

 30% id,
99% cov

DHSO_SHEEP / P07846: Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries

 31% id,
94% cov

Q2K0Q7: D-xylulose reductase (EC 1.1.1.9) from Rhizobium etli

 30% id,
97% cov

More...

PGA1_c07730: putative zinc-binding alcohol dehydrogenase
is similar to:		 PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

 33% id,
88% cov

XYL2_YEAST / Q07993: D-xylulose reductase; Xylitol dehydrogenase; XDH; EC 1.1.1.9 from Saccharomyces cerevisiae
Q07993: D-xylulose reductase (EC 1.1.1.9) from Saccharomyces cerevisiae

 26% id,
97% cov

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

 28% id,
88% cov

More...

PGA1_c04550: putative formaldehyde dehydrogenase
is similar to:		 PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

 31% id,
88% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

 29% id,
92% cov

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

 28% id,
94% cov

More...

PGA1_c03390: acetoacetyl-CoA reductase PhaB
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 28% id,
97% cov

PGA1_c02060: short-chain dehydrogenase / reductase
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 27% id,
97% cov

PGA1_c02510: S-(hydroxymethyl)glutathione dehydrogenase FrmA
is similar to:		 PaperBLAST

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

 28% id,
93% cov

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

 28% id,
91% cov

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae

 28% id,
90% cov

More...

PGA1_c07370: putative short chain dehydrogenase
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 26% id,
98% cov

PGA1_c03910: short chain dehydrogenase / reductase
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 31% id,
82% cov

PGA1_c04640: enoyl-[acyl-carrier-protein] reductase FabI
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 24% id,
100% cov

PGA1_c03870: crotonyl-CoA reductase
is similar to:		 PaperBLAST

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae

 25% id,
90% cov

Q59545: xylitol dehydrogenase (EC 1.1.1.9) from Morganella morganii

 23% id,
72% cov

A0A3S7PMB5: D-xylulose reductase (EC 1.1.1.9) from Pichia kudriavzevii

 23% id,
48% cov

PGA1_c30350: putative quinone oxidoreductase
is similar to:		 PaperBLAST

Q2K0Q7: D-xylulose reductase (EC 1.1.1.9) from Rhizobium etli

 24% id,
92% cov

Dshi_0551: D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae

 27% id,
82% cov

HSERO_RS17015: sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) from Herbaspirillum seropedicae

 24% id,
79% cov

PGA1_c15610: alcohol dehydrogenase, zinc binding
is similar to:		 PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

 34% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 17 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3597625-3598725 (frame -3) on PGA1_c
is similar to:		 PaperBLAST

xdhA / Q5GN51: D-xylulose reductase (EC 1.1.1.9) from Aspergillus niger
Also see hits to annotated proteins above

 30% id,
99% cov

Q6KAV2: D-xylulose reductase (EC 1.1.1.9) from Blastobotrys adeninivorans
Also see hits to annotated proteins above

 31% id,
95% cov

XYL2_YEAST / Q07993: D-xylulose reductase; Xylitol dehydrogenase; XDH; EC 1.1.1.9 from Saccharomyces cerevisiae
Q07993: D-xylulose reductase (EC 1.1.1.9) from Saccharomyces cerevisiae
Also see hits to annotated proteins above

 31% id,
95% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory