Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c02560: protocatechuate 3,4-dioxygenase beta chain
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

29% id,
73% cov

PGA1_c02550: protocatechuate 3,4-dioxygenase alpha chain
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

27% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory