Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 30 curated entries in PaperBLAST's database that match '1.13.11.11' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c09970: tryptophan 2,3-dioxygenase KynA
is similar to:		 PaperBLAST

RR42_RS15390: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Cupriavidus basilensis

 63% id,
94% cov

T23O_CUPMC / Q1LK00: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Cupriavidus metallidurans
kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Ralstonia metallidurans

 63% id,
90% cov

PS417_23705: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas simiae

 56% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1030372-1031232 (frame -3) on PGA1_c
is similar to:		 PaperBLAST

RR42_RS15390: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Cupriavidus basilensis
Also see hits to annotated proteins above

 61% id,
98% cov

T23O_RAT / P21643: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Rattus norvegicus
P21643: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Rattus norvegicus
Also see hits to annotated proteins above

 38% id,
38% cov

P48776: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Mus musculus
Also see hits to annotated proteins above

 37% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory