Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c00440: homogentisate 1,2-dioxygenase HmgA
is similar to:
PaperBLAST

HGD_RHIME / Q9X4F5: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Rhizobium meliloti

67% id,
99% cov

RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis

53% id,
96% cov

HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida
Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida

51% id,
99% cov

More...

PGA1_c09970: tryptophan 2,3-dioxygenase KynA
is similar to:
PaperBLAST

Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris

47% id,
91% cov

P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster

36% id,
51% cov

P21643: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Rattus norvegicus

38% id,
35% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory