Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 33 curated entries in PaperBLAST's database that match '1.3.1.12'.

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c25230: protein TyrC
is similar to:
PaperBLAST

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

58% id,
85% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

41% id,
97% cov

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

33% id,
90% cov

More...

PGA1_c07370: putative short chain dehydrogenase
is similar to:
PaperBLAST

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

34% id,
86% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

33% id,
86% cov

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus

33% id,
86% cov

More...

PGA1_c27390: short-chain dehydrogenase/reductase
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

31% id,
89% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

28% id,
88% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

28% id,
85% cov

More...

PGA1_c16810: enoyl-[acyl-carrier-protein] reductase FabI
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

27% id,
94% cov

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

27% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

29% id,
70% cov

More...

PGA1_c23480: putative D-beta-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

29% id,
85% cov

PGA1_c17930: 3-oxoacyl-[acyl-carrier-protein] reductase FabG
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

28% id,
87% cov

PGA1_c07740: putative gluconate 5-dehydrogenase
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

28% id,
87% cov

PGA1_c02870: short chain dehydrogenase
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

28% id,
85% cov

PGA1_c08430: short chain dehydrogenase / reductase
is similar to:
PaperBLAST

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

28% id,
83% cov

DECR_HUMAN / Q16698: 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial; 2,4-dienoyl-CoA reductase [NADPH]; 4-enoyl-CoA reductase [NADPH]; Short chain dehydrogenase/reductase family 18C member 1; EC 1.3.1.124 from Homo sapiens

26% id,
73% cov

PGA1_c23090: putative acetoin(diacetyl) reductase
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

27% id,
86% cov

PGA1_c10000: short chain dehydrogenase / reductase
is similar to:
PaperBLAST

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

27% id,
84% cov

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus

26% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

25% id,
84% cov

More...

PGA1_c04640: enoyl-[acyl-carrier-protein] reductase FabI
is similar to:
PaperBLAST

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

27% id,
84% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

29% id,
67% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

29% id,
67% cov

More...

PGA1_c02060: short-chain dehydrogenase / reductase
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

27% id,
85% cov

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

30% id,
58% cov

PGA1_c23120: putative sorbitol dehydrogenase
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

24% id,
85% cov

PGA1_c31980: short chain dehydrogenase
is similar to:
PaperBLAST

DECR_HUMAN / Q16698: 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial; 2,4-dienoyl-CoA reductase [NADPH]; 4-enoyl-CoA reductase [NADPH]; Short chain dehydrogenase/reductase family 18C member 1; EC 1.3.1.124 from Homo sapiens

27% id,
73% cov

PGA1_c00590: chorismate mutase
is similar to:
PaperBLAST

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

37% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

759111-759926 (frame -1) on PGA1_c
is similar to:
PaperBLAST

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens
Also see hits to annotated proteins above

33% id,
92% cov

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus
Also see hits to annotated proteins above

33% id,
92% cov

DECR_HUMAN / Q16698: 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial; 2,4-dienoyl-CoA reductase [NADPH]; 4-enoyl-CoA reductase [NADPH]; Short chain dehydrogenase/reductase family 18C member 1; EC 1.3.1.124 from Homo sapiens
Also see hits to annotated proteins above

26% id,
79% cov

1874021-1874770 (frame -2) on PGA1_c
is similar to:
PaperBLAST

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus
Also see hits to annotated proteins above

32% id,
88% cov

DECR2_MOUSE / Q9WV68: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; EC 1.3.1.124 from Mus musculus
Also see hits to annotated proteins above

29% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory