Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 6 curated entries in PaperBLAST's database that match '1.3.1.13'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c06690: prephenate deydrogenase-like protein
is similar to:
PaperBLAST

Ga0059261_2298: prephenate and/or arogenate dehydrogenase (EC 1.3.1.13) from Sphingomonas koreensis

43% id,
94% cov

PGA1_c25230: protein TyrC
is similar to:
PaperBLAST

Ga0059261_2298: prephenate and/or arogenate dehydrogenase (EC 1.3.1.13) from Sphingomonas koreensis

29% id,
75% cov

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

24% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory