Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 2 curated entries in PaperBLAST's database that match '1.3.1.43' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c25230: protein TyrC
is similar to:
PaperBLAST

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

41% id,
97% cov

PGA1_c06690: prephenate deydrogenase-like protein
is similar to:
PaperBLAST

AroDH-1 / B4FY98: arogenate dehydrogenase 1 (EC 1.3.1.43) from Zea mays

27% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory