Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 43 curated entries in PaperBLAST's database that match '1.3.3.6'.

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c15710: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

34% id,
88% cov

ACOX2_CUCMA / O64894: Acyl-coenzyme A oxidase, peroxisomal; AOX; Long-chain acyl-CoA oxidase; EC 1.3.3.6 from Cucurbita maxima

22% id,
51% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
35% cov

More...

PGA1_c10280: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

30% id,
85% cov

PGA1_c12060: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
84% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

27% id,
53% cov

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

27% id,
53% cov

More...

PGA1_c01110: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
84% cov

PGA1_c34220: acyl-CoA dehydrogenase AcdA
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
84% cov

ACO12_ARATH / Q9ZQP2: Putative peroxisomal acyl-coenzyme A oxidase 1.2; EC 1.3.3.6 from Arabidopsis thaliana
Q9ZQP2: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

23% id,
56% cov

PGA1_c04140: putative acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
79% cov

PGA1_c04630: 2-nitropropane dioxygenase
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

27% id,
74% cov

PGA1_c23450: acyl-CoA dehydrogenase AcdA
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
78% cov

PGA1_c22710: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
83% cov

PGA1_c13810: putative long-chain specific acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
66% cov

PGA1_c13710: diaminopimelate decarboxylase-like protein
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
52% cov

PGA1_c17340: acyl-CoA dehydrogenase AcdA
is similar to:
PaperBLAST

ACOX1_RAT / P07872: Peroxisomal acyl-coenzyme A oxidase 1; AOX; Palmitoyl-CoA oxidase; EC 1.3.3.6 from Rattus norvegicus
P07872: acyl-CoA oxidase (EC 1.3.3.6) from Rattus norvegicus

22% id,
54% cov

ACOX1_MOUSE / Q9R0H0: Peroxisomal acyl-coenzyme A oxidase 1; AOX; Palmitoyl-CoA oxidase; EC 1.3.3.6 from Mus musculus

23% id,
47% cov

PGA1_c12080: putative acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory