Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 29 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_78p00310: glycine dehydrogenase
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

59% id,
98% cov

Q91W43: glycine cleavage system (EC 1.4.1.27) from Mus musculus

55% id,
93% cov

P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

54% id,
94% cov

More...

PGA1_c23190: dihydrolipoyl dehydrogenase LpdA
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

52% id,
97% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

40% id,
91% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

40% id,
90% cov

More...

PGA1_c03550: dihydrolipoyl dehydrogenase 2
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

54% id,
92% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

53% id,
91% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

49% id,
91% cov

More...

PGA1_78p00260: dihydrolipoyl dehydrogenase LpdA
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

54% id,
91% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

53% id,
92% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

51% id,
92% cov

More...

PGA1_c05560: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

53% id,
92% cov

P11183: H-protein-(lipoyl)lysine (EC 1.4.1.27) from Gallus gallus
P11183: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Gallus gallus

48% id,
71% cov

B0F467: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Paratrimastix pyriformis

42% id,
80% cov

More...

PGA1_78p00300: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

50% id,
91% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

40% id,
90% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

48% id,
70% cov

More...

PGA1_78p00290: aminomethyltransferase GcvT
is similar to:
PaperBLAST

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

48% id,
91% cov

O65396: glycine cleavage system (subunit 1/5) (EC 1.4.1.27) from Arabidopsis thaliana

46% id,
91% cov

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

41% id,
95% cov

More...

PGA1_c20500: leucine dehydrogenase Ldh
is similar to:
PaperBLAST

DHPH_CALTT / F5L9G2: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Caldalkalibacillus thermarum

44% id,
95% cov

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

44% id,
92% cov

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

43% id,
93% cov

More...

PGA1_c08740: glutamate dehydrogenase GluD
is similar to:
PaperBLAST

P00366: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Bos taurus

44% id,
88% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

45% id,
86% cov

Q43314: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Arabidopsis thaliana

46% id,
83% cov

More...

PGA1_c17390: dihydrolipoyl dehydrogenase LpdA
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

39% id,
93% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
92% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

38% id,
92% cov

More...

PGA1_c02180: dihydrolipoyl dehydrogenase LpdA
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

33% id,
97% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
99% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

30% id,
91% cov

More...

PGA1_c23390: putative sarcosine dehydrogenase
is similar to:
PaperBLAST

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

33% id,
96% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

28% id,
92% cov

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

25% id,
96% cov

PGA1_c23720: glutathione reductase Gor
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

32% id,
98% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

34% id,
89% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

33% id,
89% cov

More...

PGA1_c31610: putative soluble pyridine nucleotide transhydrogenase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
99% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

28% id,
100% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

29% id,
93% cov

More...

PGA1_c33110: sarcosine dehydrogenase
is similar to:
PaperBLAST

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

30% id,
98% cov

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

28% id,
96% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

27% id,
99% cov

More...

PGA1_c19150: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

29% id,
98% cov

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

26% id,
98% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

26% id,
95% cov

PGA1_c23300: putative sarcosine dehydrogenase
is similar to:
PaperBLAST

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
93% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

30% id,
89% cov

A0A122IGX3: glycine cleavage system (EC 1.4.1.27) from Plasmodium berghei

21% id,
85% cov

PGA1_c33130: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

30% id,
91% cov

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
93% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

26% id,
89% cov

More...

PGA1_c02360: pyridine nucleotide-disulphide oxidoreductase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

29% id,
90% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

27% id,
94% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

29% id,
89% cov

More...

PGA1_c31650: putative ornithine cyclodeaminase/mu-crystallin family protein
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

27% id,
97% cov

PGA1_262p01830: putative aminomethyltransferase
is similar to:
PaperBLAST

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens

29% id,
89% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

28% id,
90% cov

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

27% id,
89% cov

More...

PGA1_262p01400: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

26% id,
97% cov

PGA1_c14040: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

28% id,
88% cov

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

24% id,
90% cov

PGA1_c08760: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

27% id,
90% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

22% id,
80% cov

PGA1_c28230: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

26% id,
91% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

27% id,
87% cov

O65396: glycine cleavage system (subunit 1/5) (EC 1.4.1.27) from Arabidopsis thaliana

25% id,
85% cov

PGA1_c16390: ornithine cyclodeaminase ArcB
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

25% id,
75% cov

PGA1_c29270: rhodocoxin reductase ThcD
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

24% id,
46% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

23% id,
46% cov

PGA1_c29100: 2,4-dienoyl-CoA reductase FadH
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

36% id,
11% cov

PGA1_c12810: pyridine nucleotide-disulphide oxidoreductase-like protein
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

49% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 30 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

341415-342899 (frame -1) on PGA1_c
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

52% id,
98% cov

1819094-1820530 (frame -2) on PGA1_c
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

39% id,
94% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
93% cov

569689-570975 (frame +1) on PGA1_c
is similar to:
PaperBLAST

B0F465: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Paratrimastix pyriformis
Also see hits to annotated proteins above

37% id,
86% cov

P26969: glycine cleavage system (subunit 3/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

52% id,
40% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

50% id,
40% cov

3305077-3306096 (frame +1) on PGA1_c
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Also see hits to annotated proteins above

27% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory